Installation¶
In the Sali Lab¶
If you are working in the Sali lab, you don’t need to build and install
MiST - it is already set up for you as a module. Just run
module load mist
to load it.
Dependencies¶
- Python 2.6 or later (Python 3 should work too).
- The scikit-learn Python package. The
sklearn
package is expected to be found in the standard Python search path (e.g.PYTHONPATH
). - nose is also needed to run the test suite (recommended but not essential).
In the Sali lab, running
module load python/scikit
will get all of these dependencies.
Building¶
Use make test
to test the library, and make install
to install it.
In most cases you will need to tell make
where to install (if running on
a Linux cluster, MiST will need to be installed on a network-accessible
filesystem) with something like
make PREFIX=/shared/mist install
.